MMvsPS {ProCoNA} | R Documentation |
Plots the module membership (correlation to eigenvector) against the peptide significance (correlation to phenotype) for a given trait and module
MMvsPS(pnet, pepdat, phenoVec, mod)
pnet |
The procona network |
pepdat |
the peptide data, with rows as samples and columns as peptides |
phenoVec |
the phenotypic trait, vector |
mod |
the module of interest |
returns a list of module memberships and peptide significances.
David L Gibbs
data(ProCoNA_Data) #net1 <- buildProconaNetwork("peptide network", peptideData, pow=13) MMvsPS(net1, peptideData, phenotypes[,5], 1)