getFisherMatrix {ProCoNA} | R Documentation |
Fisher's exact test pairwise on modules.
getFisherMatrix(peps1, peps2, colors1, colors2)
peps1 |
Names of entities in the network (nodes of network 1) |
peps2 |
Names of entities in the network (nodes of network 2) |
colors1 |
the module assignments for network 1 |
colors2 |
the module assignments for network 2 |
Returns the fisher test pvalues and count of overlapping peptides.
David L Gibbs
data(ProCoNA_Data) #net1 <- buildProconaNetwork("peptide network", peptideData, pow=12) #net2 <- buildProconaNetwork("peptide network", peptideData + 0.3*rnorm(length(peptideData)), pow=12) getFisherMatrix(peptides(net1), peptides(net2), mergedColors(net1), mergedColors(net2))