vectorOutputMatrices {PhenStat} | R Documentation |
Returns count matrices from Fisher Exact Test framework in a vector form.
Note: Maximal supported number of dependent variable levels is 10.
vectorOutputMatrices(phenTestResult,outputMessages=TRUE)
phenTestResult |
instance of the |
outputMessages |
flag: "FALSE" value to suppress output messages; "TRUE" value to show output messages; default value TRUE |
Returns a vector with count values.
Natalja Kurbatova, Natasha Karp, Jeremy Mason
Karp N, Melvin D, Sanger Mouse Genetics Project, Mott R (2012): Robust and Sensitive Analysis of Mouse Knockout Phenotypes. PLoS ONE 7(12): e52410. doi:10.1371/journal.pone.0052410
West B, Welch K, Galecki A (2007): Linear Mixed Models: A practical guide using statistical software New York: Chapman & Hall/CRC 353 p.
file <- system.file("extdata", "test_categorical.csv", package="PhenStat") test <- PhenStat:::PhenList(dataset=read.csv(file,na.strings = '-'), testGenotype="Aff3/Aff3") result <- PhenStat:::testDataset(test, depVariable="Thoracic.Processes", method="FE") PhenStat:::vectorOutputMatrices(result)