plotPCoAPlotly {PathoStat} | R Documentation |
Plot PCoA
plotPCoAPlotly(physeq.input, condition.color.vec, condition.color.name = "condition", condition.shape.vec, condition.shape.name = "condition", method = "bray", columnTitle = "Title", pc.a = "Axis.1", pc.b = "Axis.2")
physeq.input |
Input data object that contains the data to be plotted. Required |
condition.color.vec |
color vector. Required |
condition.color.name |
color variable name. Required |
condition.shape.vec |
shape vector. Required |
condition.shape.name |
shape variable name. Required |
method |
which distance metric |
columnTitle |
Title to be displayed at top of heatmap. |
pc.a |
pc.1 |
pc.b |
pc.2 |
the plot
data_dir_test <- system.file("data", package = "PathoStat") pstat_test <- loadPstat(indir=data_dir_test, infileName="pstat_data_2_L1.rda") plotPCoAPlotly(pstat_test, condition.color.vec = rbinom(33,1,0.5), condition.shape.vec = rbinom(33,1,0.5))