findTaxonomy {PathoStat}R Documentation

Find the taxonomy for each taxon ids

Description

Find the taxonomy for each taxon ids

Usage

findTaxonomy(tids)

Arguments

tids

Given taxonomy ids

Value

taxondata Data with the taxonomy information

Examples

example_data_dir <- system.file("example/data", package = "PathoStat")
pathoreport_file_suffix <- "-sam-report.tsv"
datlist <- readPathoscopeData(example_data_dir, pathoreport_file_suffix)
dat <- datlist$data
ids <- rownames(dat)
tids <- unlist(lapply(ids, FUN = grepTid))
taxonLevels <- findTaxonomy(tids[1:5])

[Package PathoStat version 1.6.1 Index]