TranslateIdToTaxLevel {PathoStat} | R Documentation |
Find the taxonomy for the given taxon id name
TranslateIdToTaxLevel(pstat, input.id.vec, tax.level)
pstat |
pathostat object |
input.id.vec |
names containing id |
tax.level |
target taxon level |
target taxon level names
data_dir_test <- system.file("data", package = "PathoStat") pstat_test <- loadPstat(indir=data_dir_test, infileName="pstat_data_2_L1.rda") names.new <- TranslateIdToTaxLevel(pstat_test, c("ti|862962|org|Bacteroides_fragilis_638R", "ti|697329|org|Ruminococcus_albus_7" ), "genus")