get.experiment.setup {OSAT} | R Documentation |
Return a data frame that contains sample and assigned well postion.
get.experiment.setup(x)
x |
A |
A data frame is returned in the order of initial sample data frame, with additional columns indicate assgined well position.
library("OSAT") # data as an example inPath <- system.file("extdata", package="OSAT") pheno <- read.table(file.path(inPath, 'samples.txt'), header=TRUE, sep="\t") ## create object to hold sample information gs <- setup.sample(pheno, optimal=c("SampleType", "Race", "AgeGrp"), strata=c("SampleType") ) gs gc <- setup.container(IlluminaBeadChip96Plate, 6, batch='plates') gc # demonstration only. nSim=5000 or more are commonly used. gSetup <- create.optimized.setup(sample=gs, container=gc, nSim=500) mySetup <- get.experiment.setup(gSetup)