expressionSetPheno {OGSA} | R Documentation |
Returns pheno info
expressionSetPheno(expressionSet)
expressionSet |
ExpressionSet object containing sets of data and phenotype information |
A list with all specific outlier calls for each molecular type in each case sample
Ochs, M. F., Farrar, J. E., Considine, M., Wei, Y., Meshinchi, S., & Arceci, R. J. (n.d.). Outlier Analysis and Top Scoring Pair for Integrated Data Analysis and Biomarker Discovery. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 1-1. doi:10.1109/tcbb.2013.153
data(ExampleData) library(Biobase) # building the Annotated Data Frame phenoData <- AnnotatedDataFrame( data.frame( type = factor(x = pheno, labels = c("Control", "Case")), row.names = colnames(expr) ) ) # build environment inputData <- list2env(list(exprs = expr, meth = meth, cnv = cnv)) # build expressionSet - other information can be added here expressionSet <- ExpressionSet(inputData, phenoData) # retrieve phenotype data phenotype <- expressionSetPheno(expressionSet)