getGademPWM {MotIV} | R Documentation |
This function selects the PWMs contained in an object of type gadem
.
getGademPWM(y)
y |
A |
A list of PWM.
Eloi Mercier <emercier@chibi.ubc.ca>
#####Database and Scores##### path <- system.file(package="MotIV") jaspar <- readPWMfile(paste(path,"/extdata/jaspar2010.txt",sep="")) jaspar.scores <- readDBScores(paste(path,"/extdata/jaspar2010_PCC_SWU.scores",sep="")) #####Input##### data(FOXA1_rGADEM) # motifs <- getGademPWM(gadem) #depreciated motifs <- getPWM(gadem) motifs.trimed <- lapply(motifs,trimPWMedge, threshold=1)