db {MSGFplus} | R Documentation |
These functions allow you to retrieve and set the location of the database fasta file in the msgfPar object of interest
db(object) db(object) <- value ## S4 method for signature 'msgfPar' db(object) ## S4 replacement method for signature 'msgfPar,character' db(object) <- value
object |
An msgfPar object |
value |
A string matching the location of a fasta file |
In case of the getter a character vector with the location of the database file
msgfPar
: Get the database location
object = msgfPar,value = character
: Set the database location
Other msgfPar-getter_setter: chargeRange
,
enzyme
, fragmentation
,
instrument
, isotopeError
,
lengthRange
, matches
,
mods
, ntt
,
protocol
, tda
,
tolerance
parameters <- msgfPar() db(parameters) <- system.file(package='MSGFplus', 'extdata', 'milk-proteins.fasta') db(parameters)