EnrichedView {MAGeCKFlute} | R Documentation |
Grid plot for enriched terms
EnrichedView(enrichment, plotTitle = NULL, color = "#3f90f7", termNum = 15, charLength = 40, filename = NULL, width = 5, height = 4, ...)
enrichment |
A data frame of enrichment result, with columns of ID, Description, p.adjust and Count. |
plotTitle |
Same as 'title' in 'plot'. |
color |
Color of nodes. |
termNum |
Integer, specifying number of top enriched terms to show. |
charLength |
Integer, specifying max length of enriched term name to show as coordinate lab. |
filename |
Figure file name to create on disk. Default filename="NULL", which means no output. |
width |
As in ggsave. |
height |
As in ggsave. |
... |
Other available parameters in ggsave. |
An object created by ggplot
, which can be assigned and further customized.
Feizhen Wu
data(geneList, package = "DOSE") genes <- names(geneList)[1:100] enrichRes <- enrich.HGT(genes) EnrichedView(enrichment=enrichRes@result)