ReadBeta {MAGeCKFlute}R Documentation

Read gene beta scores

Description

Read gene beta scores from file or data frame

Usage

ReadBeta(gene_summary, organism = "hsa")

Arguments

gene_summary

A file path or a data frame, data frame, which has columns of 'Gene' and '*|beta'.

organism

Character, KEGG species code, or the common species name, used to determine the gene annotation package. For all potential values check: data(bods); bods. Default org="hsa", and can also be "human" (case insensitive).

Value

A data frame, in which the first column is ENTREZID, and the later columns are beta score for each samples.

Author(s)

Wubing Zhang

Examples

data(MLE_Data)
dd = ReadBeta(MLE_Data, organism="hsa")
head(dd)


[Package MAGeCKFlute version 1.0.1 Index]