ReadRRA {MAGeCKFlute}R Documentation

Read MAGeCK-RRA data

Description

Read pvalue of gene selection from file or data frame

Usage

ReadRRA(gene_summary, organism = "hsa")

Arguments

gene_summary

A file path or a data frame, which has three columns named 'id', 'neg.fdr' and 'pos.fdr'.

organism

Character, KEGG species code, or the common species name, used to determine the gene annotation package. For all potential values check: data(bods); bods. Default org="hsa", and can also be "human" (case insensitive).

Value

A data frame including four columns, named "Official", "neg.fdr", "pos.fdr" and "ENTREZID".

Author(s)

Wubing Zhang

Examples

data(RRA_Data)
dd.rra = ReadRRA(RRA_Data, organism="hsa")
head(dd.rra)


[Package MAGeCKFlute version 1.0.1 Index]