rayplot_single_coordinate {IrisSpatialFeatures} | R Documentation |
Plot nearest neighbor ray plots for a single coordinate
rayplot_single_coordinate(x, from_type, to_type, samp_name = "", from_col = "#EE7600", to_col = "#028482", lineColor = "#666666", use_pixel = FALSE, microns_per_pixel = 0.496) ## S4 method for signature 'Coordinate' rayplot_single_coordinate(x, from_type, to_type, samp_name = "", from_col = "#EE7600", to_col = "#028482", lineColor = "#666666", use_pixel = FALSE, microns_per_pixel = 0.496)
x |
An Coordinate object |
from_type |
Cell type from which the rays are drawn |
to_type |
Cell type to which the rays are drawn |
samp_name |
Name of the sample |
from_col |
Color for the 'from' cell-type (Default: '#EE7600') |
to_col |
Color for the 'to' cell-type (Default: '#028482') |
lineColor |
Color for the line (Default: '#666666') |
use_pixel |
Express units as pixels (Default: FALSE) |
microns_per_pixel |
Conversion (Default: 0.496) |
a plot
#loading pre-read dataset dataset <- IrisSpatialFeatures_data dataset <- extract_nearest_neighbor(dataset) rayplot_single_coordinate(x = dataset@samples[[1]]@coordinates[[1]], samp_name = dataset@samples[[1]]@sample_name, from_type = "SOX10+ PDL1+", to_type = "CD8+ PD1+")