get_interactions {IrisSpatialFeatures} | R Documentation |
Get interactions for a specific marker
get_interactions(x, ...) ## S4 method for signature 'ImageSet' get_interactions(x, marker, normalize = TRUE)
x |
An IrisSpatialFeatures ImageSet object |
... |
Additional arguments. |
marker |
Cell-type for which the interactions should be pulled |
normalize |
Flag to indicated whether to normalize each sample so all interactions sum up to 1 (Default: 1) |
interactions for a specific marker
#' #loading pre-read dataset dataset <- IrisSpatialFeatures_data dataset <- extract_interactions(dataset) get_interactions(dataset,'CD8+ PD1+')