get_nearest_neighbors {IrisSpatialFeatures}R Documentation

Get the nearest neighbor for a specified cell-type

Description

Get the nearest neighbor for a specified cell-type

Usage

get_nearest_neighbors(x, ...)

## S4 method for signature 'ImageSet'
get_nearest_neighbors(x, marker)

Arguments

x

An IrisSpatialFeatures ImageSet object

...

Additional arguments

marker

Cell type for which the nearest neighbor should be calculated

Value

nearest neighbors for the specified cell-type

Examples

#' #loading pre-read dataset
dataset <- IrisSpatialFeatures_data
dataset <- extract_nearest_neighbor(dataset,min_num_cells=2)
get_nearest_neighbors(dataset,"SOX10+ PDL1+")


[Package IrisSpatialFeatures version 1.3.0 Index]