collapse_markers {IrisSpatialFeatures} | R Documentation |
This function collapses two markers into one, and reruns the counting of cells. Mostly a convenience function for the Shiny interface so we start with a completely split set successively adding more markers
collapse_markers(image_set, marker1, marker2, combined) ## S4 method for signature 'ImageSet' collapse_markers(image_set, marker1, marker2, combined)
image_set |
IrisSpatialFeatures ImageSet object. |
marker1 |
Name of the first marker that should be collapsed. |
marker2 |
Name of the second marker that should be collapsed. |
combined |
Name of the combined marker. |
IrisSpatialFeatures ImageSet object.
dataset <- IrisSpatialFeatures_data ds <- collapse_markers(dataset,marker1="SOX10+ PDL1+",marker2="SOX10+ PDL1-", combined="SOX10+")