attributes {IntEREst} | R Documentation |
Several functions are provided that can extract various attribnutes from an
object of class SummarizedExperiment
generated by IntEREst functions,
e.g. interest()
, interest
, and readInterestResults
. It is
possible to extract sample annotations using getAnnotation
function.
One can also extract the scaled retention levels of the introns/exons using
scaledRetention()
function. Notes that colData
and rowData
methods of SummarizedExperiment
class can also be used to extract row
and column data.
getAnnotation(x) scaledRetention(x)
x |
Object of type |
Various data types (data.frame/vector) dependent on the function used. See the "Description" for more information.
Ali Oghabian
SummarizedExperiment-class
addAnnotation
counts-method
plot-method
# Retrieve the sample annotations from mdsChr22Obj getAnnotation(mdsChr22Obj) # Retrieving the scaled retention levels from mdsChr22Obj head(scaledRetention(mdsChr22Obj)) #for row and column data SummarizedExperiment methods can be used head(rowData(mdsChr22Obj)) colData(mdsChr22Obj)