findCorrelation {InTAD} | R Documentation |
This function combines genes and signals in inside of TADs
findCorrelation(object, method = "pearson", adj.pval = FALSE, plot.proportions = FALSE)
object |
InTADSig object with signals and genes combined in TADS |
method |
Correlation method: "pearson" (default), "kendall", "spearman" |
adj.pval |
Perform p-value adjsutment and include q-values in result |
plot.proportions |
Plot proportions of signals and genes in correlation |
A table with correlation values for signal-gene pairs
## perform analysis on test data inTadSig <- newSigInTAD(enhSel, enhSelGR, rpkmCountsSel, txsSel) inTadSig <- filterGeneExpr(inTadSig, geneType = "protein_coding") inTadSig <- combineInTAD(inTadSig, tadGR) corData <- findCorrelation(inTadSig, method="pearson")