getProcedures {IMPCdata}R Documentation

Method "getProcedures"

Description

Returns the list of procedures (IMPReSS IDs) that are run for a specified phenotyping center and pipeline.

Usage

    getProcedures(PhenCenterName=NULL,PipelineID=NULL)

Arguments

PhenCenterName

IMPC phenotyping center; mandatory argument

PipelineID

IMPC pipeline ID; mandatory argument

Value

Returns the list of IMPC procedures (IDS of procedures) that are run by specified phenotyping center and pipeline.

Author(s)

Natalja Kurbatova, Jeremy Mason

Examples

    listProcedures  <- getProcedures("WTSI","MGP_001")
    for (procedureIndex in 1:min(length(listProcedures), 5)) { # Print the name of 5 procedures
        print(paste(listProcedures[procedureIndex],"-",
                        getName("procedure_stable_id","procedure_name",listProcedures[procedureIndex])))
    }

[Package IMPCdata version 1.16.0 Index]