makeGSEAplots {HTSanalyzeR}R Documentation

Produce GSEA plots

Description

This is an internal function.

Usage

makeGSEAplots(geneList, geneSet, exponent, filepath, filename, 
output='png', ...)

Arguments

geneList

a numeric or integer vector of phenotypes in descending or ascending order with elements named by their Entrez IDs (no duplicates nor NA values)

geneSet

a character vector of gene identifiers of a gene set

exponent

a single integer or numeric value used in weighting phenotypes in GSEA

filepath

a single character value specifying the directory where the GSEA plot will be stored

filename

a single character value specifying the name of the file where the GSEA plot will be stored

output

a single character value specifying the format of output image: "pdf" or "png"

...

other arguments used by the function 'png' or 'pdf' such as width and height

Details

This is an internal function.

Author(s)

Benilton Carvalho, Xin Wang


[Package HTSanalyzeR version 2.32.0 Index]