BED12toGRangesList {Guitar}R Documentation

BED12toGRangesList

Description

read bed12 format into R as GRangesList object

Usage

BED12toGRangesList(filepath, header)

Arguments

filepath

the path where the bed12 file is located

header

whether the bed12 file has header or not, default: FALSE

Details

The function read bed12 into R as GRangesList object, with the introns spliced out, making it different from other functions such as import.bed.

Value

The returned GRangsList object has the same number of GRangesLists as the number of rows in the bed12 file.

Author(s)

Jia Meng <jia.meng@hotmail.com>

References

For more infomration about the bed format, please refer to: https://genome.ucsc.edu/FAQ/FAQformat.html#format1

Examples

bed12=system.file("extdata", "m6A_mm10_exomePeak_1000peaks_bed12.bed", package="Guitar")
m6A_HepG2 <- BED12toGRangesList(bed12) 

[Package Guitar version 1.18.0 Index]