yeastAnno {Genominator} | R Documentation |
3 example datasets from Genominator; 2 contain annotation information
from yeast and 1 contain actual data from yeast as well. A bigger
dataset is available in the experimental data package
yeastRNASeq
.
data(yeastAnno) data(yeastAnno.sources) data(chr1_yeast)
yeastAnno
is a data frame with 7124 observations on the
following 5 variables: chr
, start
, end
,
strand
, gene_biotype
.
yeastAnno.sources
is a list with four components names
ensembl.gene
, ensembl.transcript
, ucsc.sgdGene
,
ucsc.ensGene
containing annotation on yeast from 2 different
sources (Ensembl and UCSC), each sources has two different queries
(one gene-level, one transcript-level). The annotation was obtained
in January 2010 and should not be used for analysis.
chr1_yeast
is a data frame containing mock data in yeast from
two different samples (labelled mRNA_1
and mRNA_2
),
linked to distinct genomic locations. There may be several data
values linked to each genomic location.
Ensembl and UCSC January 2010.
There is a discussion of the yeastAnno.sources
in the
withShortRead
vignette.
data(yeastAnno) head(yeastAnno) data(yeastAnno.sources) names(yeastAnno.sources) head(yeastAnno.sources$ensembl.gene) data(chr1_yeast) head(chr1_yeast)