AggregateSimple {GeneSelector} | R Documentation |
All obtained rankings are aggregated by a genewise summary measure
.
AggregateSimple(RR, measure = c("mode", "mean", "trimmed.mean", "median", "quantile"), q=NULL, trim = NULL)
RR |
An object of class |
measure |
The statistic to be used as basis for the aggregated ranking.
|
q |
Only specified if |
trim |
s. |
An object of class AggregatedRanking.
Martin Slawski
Anne-Laure Boulesteix
RepeatRanking, AggregateSVD, AggregatePenalty, AggregateMC
## Load toy gene expression data data(toydata) ### class labels yy <- toydata[1,] ### gene expression xx <- toydata[-1,] ### run RankingTstat ordT <- RankingTstat(xx, yy, type="unpaired") ### Generate Leave-one-out Foldmatrix loo <- GenerateFoldMatrix(y = yy, k=1) ### Get all rankings loor_ordT <- RepeatRanking(ordT, loo) ### aggregate rankings agg_simple_ordT <- AggregateSimple(loor_ordT, measure ="mean") toplist(agg_simple_ordT)