bpGenes,CopyNumberBreakPointGenes-method {GeneBreak} | R Documentation |
Indentifies genes affected by breakpoint locations.
## S4 method for signature 'CopyNumberBreakPointGenes' bpGenes(object)
object |
An object of class CopyNumberBreakPointGenes |
This step requires feature-to-gene annotations added to the input object (see ?addGeneAnnotation
).
Returns an object of class CopyNumberBreakPointGenes with gene-breakpoint information
data( copynumber.data.chr20 ) data( ens.gene.ann.hg18 ) bp <- getBreakpoints( copynumber.data.chr20 ) bp <- bpFilter( bp ) bp <- addGeneAnnotation( bp, ens.gene.ann.hg18 ) bp <- bpGenes( bp ) ## options to inspect the data bp accessOptions( bp )