expression {GSALightning} | R Documentation |
This is a subset of the breast cancer expression data set obtained from The Cancer Genome Atlas (TCGA) consortium and processed by the Pan-Cancer project group. The data was downloaded originally using the ELMER Bioconductor package. The gene names have been converted to gene symbols in this data.
data("expression")
A matrix with 909 genes and 1218 subjects, of which 114 are controls.
The Cancer Genome Atlas (2012) Comprehensive molecular characterization of human colon and rectal cancer. Nature 487:330-337.
Weinstein, John N., et al. "The cancer genome atlas pan-cancer analysis project." Nature genetics 45.10 (2013): 1113-1120.
Yao, L., et al. "Inferring regulatory element landscapes and transcription factor networks from cancer methylomes." Genome biology 16.1 (2015): 105-105.
data(expression) str(expression)