AlvMac_allGO {GOexpress} | R Documentation |
An example data.frame
providing the identifier, name and namespace
corresponding
to gene ontology identifiers, compatible with the AlvMac
example
ExpressionSet
.
data("AlvMac_allGO")
This data-frame includes all gene ontologies present in the
btaurus_gene_ensembl
dataset of the Ensembl BioMart server, including
those associated with no gene identifier in the AlvMac
example
ExpressionSet
.
See the help page of the GO_analyse
function for an example usage.
A data frame detailing information about 13,302 gene ontologies:
go_id
are gene ontology identifiers.
name_1006
contains the corresponding gene ontology name.
namespace_1003
contains the corresponding gene ontology
namespace (i.e. "biological_process", "molecular_function", or
"cellular_component")
These annotations were obtained from the Ensembl BioMart server using the
biomaRt
package to access the Ensembl release 75
http://feb2014.archive.ensembl.org.
# Load the data data(AlvMac_allGO) # Structure of the data str(AlvMac_allGO) # First few rows head(AlvMac_allGO)