gdcClinicalMerge {GDCRNATools} | R Documentation |
Merge clinical data in .xml
files
that are downloaded from GDC to a dataframe
gdcClinicalMerge(path, key.info = TRUE, organized = TRUE)
path |
path to downloaded files for merging |
key.info |
logical, whether to return the key clinical
information only. If |
organized |
logical, whether the clinical data have already
been organized into a single folder (eg., data downloaded by the
'GenomicDataCommons' method are already organized).
Default is |
A dataframe of clinical data with rows are patients and columns are clinical traits
Ruidong Li and Han Qu
####### Merge clinical data ####### path <- 'Clinical/' ## Not run: clinicalDa <- gdcClinicalMerge(path=path, key.info=TRUE)