GARS_FitFun {GARS} | R Documentation |
In GARS the Fitness Function consists in calculating the Averaged Silhouette Index after a Multi-Dimensional Scaling
GARS_FitFun(data, classes, chr.pop)
data |
A
' |
classes |
A vector of type "factor" with |
chr.pop |
A matrix or a data.frame representing the chromosomes population: each column is a chromosome and each element corresponds to the feature position in the expression data matrix |
A numeric vector where each element corresponds to the fitness score of each chromosome in 'chr.pop'
Mattia Chiesa, Luca Piacentini
# use example data: data(GARS_data_norm) data(GARS_classes) data(GARS_popul) fitness_scores <- GARS_FitFun(GARS_data_norm, GARS_classes, GARS_popul)