makeVCFFromGA4GHResponse {GA4GHclient}R Documentation

makeVCFFromGA4GHResponse function

Description

Convert DataFrame output from searchVariants and getVariant functions to VCF class.

Usage

makeVCFFromGA4GHResponse(variants)

Arguments

variants

DataFrame generated by searchVariants.

Value

VCF object.

See Also

searchVariants, getVariant, VCF, DataFrame

Examples

host <- "http://1kgenomes.ga4gh.org/"
## Not run: 
datasetId <- searchDatasets(host, nrows = 1)$id
variantSetId <- searchVariantSets(host, datasetId, nrows = 1)$id
variants <- searchVariants(host, variantSetId, referenceName = "1",
    start = 15000, end = 16000)
variants

makeVCFFromGA4GHResponse(variants)

## End(Not run)

[Package GA4GHclient version 1.4.0 Index]