plotNormalizationFactors {FourCSeq}R Documentation

Plot the estimated normalization factors.

Description

plotNormalizationFactors generates plots of the fits used to calculate the z-scores.

Usage

plotNormalizationFactors(object, dist = TRUE, sizeFactors = TRUE)

Arguments

object

A FourC object, after successfully calling getZScores.

dist

If TRUE (default), the normalizationFactors are plotted as a function for distance from the viewpoint. Otherwise they are plotted as a function of ranks.

sizeFactors

If TRUE, sizeFactors are calculated and plotted as horizontal bars.

Details

Plots are generated to visualize the results of the fits used to calculate the z-scores.

Author(s)

Felix A. Klein, felix.klein@embl.de

See Also

FourC, getDifferences, estimateSizeFactors

Examples

data(fcf, package="FourCSeq")

fcf <- getDifferences(fcf)

plotNormalizationFactors(fcf)

[Package FourCSeq version 1.14.0 Index]