addPeaks {FourCSeq} | R Documentation |
Fragments are annotated to be a z-score peak (TRUE or FALSE) based on z-scores and fdr values for the given fragment
addPeaks(object, zScoreThresh = 2, fdrThresh = 0.1)
object |
|
zScoreThresh |
Threshold on z-score that has to met by all replicates of a condition. |
fdrThresh |
Threshold on adjusted p-value that has to be met in at least one replicated of a condition. |
FourC
object with an additional assay 'peaks' of boolean
values. The parameters of the call to addPeaks are stored as DataFrame
peakParameter
in the metadata slot.
Felix A. Klein, felix.klein@embl.de
data(fcf, package="FourCSeq")
fcf <- addPeaks(fcf)