getCom {FELLA} | R Documentation |
Extractor function for all the nodes from a level/community of KEGG graph
getCom(data, level, format = "name")
data |
FELLA.DATA object |
level |
Desired level, can be coded as a number or a character: 1 or "pathway"; 2 or "module"; 3 or "enzyme"; 4 or "reaction"; 5 or "compound". |
format |
Format of the output, "name" returns KEGG IDs whereas "id" returns vertices IDs |
Vector of the names/ids of the desired KEGG graph community
## This function is internal attach(environment(FELLA:::getCom)) data(FELLA.sample) ## Pathways getCom(FELLA.sample, 1, format = "name") getCom(FELLA.sample, 1, format = "id") ## Modules getCom(FELLA.sample, 2) ## Enzymes head(getCom(FELLA.sample, 3)) ## Reactions head(getCom(FELLA.sample, 4)) ## Compounds head(getCom(FELLA.sample, 5))