summarize.miR {ExiMiR} | R Documentation |
This function performs summarization on an AffyBatch
object using a
GAL or CDF annotation environment and generates an ExpressionSet
object
containing the results.
summarize.miR(abatch, pmcorrect.method='pmonly', pmcorrect.param=list(), summary.method='medianpolish', summary.param=list(), summary.subset=NULL)
abatch |
An |
pmcorrect.method |
Character vector. It contains the name of the PM correction method, which is enabled
only when numerical values are available for the MM probes of the input
|
pmcorrect.param |
A |
summary.method |
Character vector. It contains the name of the summarization method. Running
|
summary.param |
A |
summary.subset |
A |
An ExpressionSet
containing the summarized expression data.
Sylvain.Gubian, Alain Sewer, PMP SA
NormiR.pmcorrect.methods
,
NormiR.summary.methods
,
NormiR
.
data(galenv) data(GSE20122) eset <- summarize.miR(GSE20122, summary.method="medianpolish")