render_report {ELMER} | R Documentation |
Build HTML report
render_report(title = "Report", mae, group.col, group1, group2, direction, dir.out, genome = "hg38", mode = "supervised", minSubgroupFrac = "20%", minMetdiff = "0.3", metfdr = "0.01", permu = "10000", rawpval = "0.01", pe = "0.01", nprobes = "10", lower.OR = "1.1", out_file = file.path(getwd(), "report.html"))
title |
HTML report title |
mae |
Absolute path to the mae used in the analysis |
group.col |
Group col |
group1 |
Group 1 |
group2 |
Group 2 |
direction |
direction used in the analysis |
dir.out |
Absolute path to folder with results. dir.out used in the analysis |
genome |
Genome of reference used in the analysis |
mode |
mode used in the analysis |
minSubgroupFrac |
minSubgroupFrac used in the analysis |
minMetdiff |
minMetdiff used in the analysis |
metfdr |
metfdr used in the analysis |
permu |
permu used in the analysis |
rawpval |
rawpval used in the analysis |
pe |
pe used in the analysis |
nprobes |
nprobes used in the analysis |
lower.OR |
lower.OR used in the analysis |
out_file |
Output file name (i.e report.html) |
## Not run: render_report(group.col = "TN", group1 = "Tumor", group2 = "Normal", dir.out = "~/paper_elmer/Result/BRCA/TN_Tumor_vs_Normal/hypo/", direction = "hypo", mae = "~/paper_elmer/Result/BRCA/BRCA_mae_hg38.rda") ## End(Not run)