Stat.nonpara {ELMER} | R Documentation |
U test (non parameter test) for permutation. This is one probe vs nearby gene which is good for computing each probes for nearby genes.
Stat.nonpara(Probe, NearGenes, Top = NULL, unmethy = NULL, methy = NULL, Meths = Meths, Exps = Exps)
Probe |
A character of name of Probe in array. |
NearGenes |
A list of nearby gene for each probe which is output of GetNearGenes function. |
Top |
A number determines the percentage of top methylated/unmethylated samples. Only used if unmethy and methy are not set. |
unmethy |
Index of U (unmethylated) group. |
methy |
Index of M (methylated) group. |
Meths |
A matrix contains methylation for each probe (row) and each sample (column). |
Exps |
A matrix contains Expression for each gene (row) and each sample (column). |
U test results