addMutCol {ELMER} | R Documentation |
Adds mutation information to MAE
addMutCol(data, disease, genes, mutant_variant_classification = c("Frame_Shift_Del", "Frame_Shift_Ins", "Missense_Mutation", "Nonsense_Mutation", "Splice_Site", "In_Frame_Del", "In_Frame_Ins", "Translation_Start_Site", "Nonstop_Mutation"))
data |
MAE object |
disease |
TCGA disease (LUSC, GBM, etc) |
genes |
list of genes to add information |
mutant_variant_classification |
List of mutant_variant_classification that will be consider a sample mutant or not. |
## Not run: data <- ELMER:::getdata("elmer.data.example") # Get data from ELMER.data data <- addMutCol(data, "LUSC","TP53") ## End(Not run)