se2msn {DEP} | R Documentation |
Use as
instead.
se2msn(se)
se |
SummarizedExperiment, Object which will be turned into a MSnSet object. |
A MSnSet object.
# Load example data <- UbiLength data <- data[data$Reverse != "+" & data$Potential.contaminant != "+",] data_unique <- make_unique(data, "Gene.names", "Protein.IDs", delim = ";") # Make SummarizedExperiment columns <- grep("LFQ.", colnames(data_unique)) exp_design <- UbiLength_ExpDesign se <- make_se(data_unique, columns, exp_design) # Convert to MSnSet data_msn <- as(se, "MSnSet") # Convert back to SE se_back <- as(data_msn, "SummarizedExperiment")