plotPatternMarkers {CoGAPS}R Documentation

plotPatternMarkers

Description

plotPatternMarkers

Usage

plotPatternMarkers(data = NA, patternMarkers = NA, patternPalette = NA,
  sampleNames = NA, samplePalette = NULL, colDenogram = TRUE, heatmapCol,
  scale = "row", ...)

Arguments

data

the dataset from which the patterns where generated

patternMarkers

the list of genes generated from the patternMarkers function

patternPalette

a vector indicating what color should be used for each pattern

sampleNames

names of the samples to use for labeling

samplePalette

a vector indicating what color should be used for each sample

colDenogram

logical indicating whether to display sample denogram

heatmapCol

pallelet giving color scheme for heatmap

scale

character indicating if the values should be centered and scaled in either the row direction or the column direction, or none. The default is "row".

...

additional graphical parameters to be passed to heatmap.2

Value

heatmap of the data values for the patternMarkers

See Also

heatmap.2


[Package CoGAPS version 3.0.2 Index]