calcCoGAPSStat {CoGAPS}R Documentation

Calculate Gene Set Statistics

Description

Calculate Gene Set Statistics

Usage

calcCoGAPSStat(Amean, Asd, GStoGenes, numPerm = 500)

Arguments

Amean

A matrix mean values

Asd

A matrix standard deviations

GStoGenes

data.frame or list with gene sets

numPerm

number of permutations for null

Details

calculates the gene set statistics for each column of A using a Z-score from the elements of the A matrix, the input gene set, and permutation tests

Value

gene set statistics for each column of A

Examples

data('SimpSim')
calcCoGAPSStat(SimpSim.result$Amean, SimpSim.result$Asd, GStoGenes=GSets,
numPerm=500)

[Package CoGAPS version 3.0.2 Index]