plotPatternMarkers {CoGAPS} | R Documentation |
plotPatternMarkers
plotPatternMarkers(data = NA, patternMarkers = NA, patternPalette = NA, sampleNames = NA, samplePalette = NULL, colDenogram = TRUE, heatmapCol, scale = "row", ...)
data |
the dataset from which the patterns where generated |
patternMarkers |
the list of genes generated from the patternMarkers function |
patternPalette |
a vector indicating what color should be used for each pattern |
sampleNames |
names of the samples to use for labeling |
samplePalette |
a vector indicating what color should be used for each sample |
colDenogram |
logical indicating whether to display sample denogram |
heatmapCol |
pallelet giving color scheme for heatmap |
scale |
character indicating if the values should be centered and scaled in either the row direction or the column direction, or none. The default is "row". |
... |
additional graphical parameters to be passed to |
heatmap of the data
values for the patternMarkers