calcGeneGSStat {CoGAPS} | R Documentation |
Probability Gene Belongs in Gene Set
calcGeneGSStat(Amean, Asd, GSGenes, numPerm, Pw = rep(1, ncol(Amean)), nullGenes = FALSE)
Amean |
A matrix mean values |
Asd |
A matrix standard deviations |
GSGenes |
data.frame or list with gene sets |
numPerm |
number of permutations for null |
Pw |
weight on genes |
nullGenes |
logical indicating gene adjustment |
calculates the probability that a gene listed in a gene set behaves like other genes in the set within the given data set
gene similiarity statistic
data('SimpSim') calcGeneGSStat(SimpSim.result$Amean, SimpSim.result$Asd, GSGenes=GSets[[1]], numPerm=500)