boundMolecules {ChIPanalyser}R Documentation

Accessor methods for boundMolecules slot in occupancyProfileParameters object.

Description

Extract or Access boundMolecules slot in occupancyProfileParameters object.

Usage

boundMolecules(object)

Arguments

object

object is a occupancyProfileParameters object.

Details

Defaut value: 1000

When computing occupancy (computeOccupancy), a value for the number of bound Molecules to DNA is needed. This value can be updated and set in a occupancyProfileParameters object. If the number of molecules is unknown,it is possible to infer this value with computeOptimal. We strongly encourage to set values when building a occupancyProfileParameters object.

Value

Returns boundMolecules slot in occupancyProfileParameters object.

Author(s)

Patrick C.N. Martin <pm16057@essex.ac.uk>

References

Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.

Examples

# Building occupancyProfileParameters object
OPP <- occupancyProfileParameters()
#Checking single value by slot accessor
boundMolecules(OPP)



[Package ChIPanalyser version 1.2.0 Index]