boundMolecules<- {ChIPanalyser} | R Documentation |
boundMolecules
slot in a
occupancyProfileParameters
object.
Setter method for the boundMolecules
slot in a
occupancyProfileParameters
object.
boundMolecules(object)<-value
object |
|
value |
|
Default value: 1000
When computing occupancy (computeOccupancy
),
a value for the number of bound Molecules to DNA is needed.
This value can be updated and set in a
occupancyProfileParameters
object.
If the number of molecules is unknown,
it is possible to infer this value with computeOptimal
.
We strongly encourage to set values when building a
occupancyProfileParameters
object.
Returns a occupancyProfileParameters
object with an updated
value for boundMolecules
.
Patrick C.N. Martin <pm16057@essex.ac.uk>
Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.
# Building occupancyProfileParameters object OPP <- occupancyProfileParameters() # Setting new boundMolecules value in OPP boundMolecules(OPP) <- 5000 #Checking value in whole object OPP #Checking single value by slot accessor boundMolecules(OPP)