BackRatesGBM {CancerMutationAnalysis} | R Documentation |
Background rates for somatic mutations used in the Parsons et al. 2008 glioblastoma multiforme (GBM) study.
data(ParsonsGBM08)
The background rates for somatic mutations used in the Parsons et al. GBM study, broken down by mutation type. The object is a data frame, with the variables representing the 25 different mutation types, and the rows specifying whether the estimates of the backgrond rates are "Upper," "Median," or "Lower."
Parsons DW, Jones S, Zhang X, Lin JCH, Leary RJ, Angenendt P, Mankoo P, Carter H, Siu I, et al. An integrated genomic analysis of human glioblastoma multiforme. Science. DOI: 10.1126/science.1164382
Parmigiani G, Lin J, Boca S, Sjoeblom T, Kinzler KW, Velculescu VE, Vogelstein B. Statistical methods for the analysis of cancer genome sequencing data. http://www.bepress.com/jhubiostat/paper126/
cma.scores
, cma.fdr
,
cma.set.stat
, cma.set.sim
,
SimMethodsSims-class
,
GeneCovGBM
,
GeneSampGBM
,
GeneAlterGBM