load_ctd_dise {CTDquerier} | R Documentation |
.tsv.gz
file for diseaseFunction to load the .tsv.gz
file for disease
load_ctd_dise(filename = "CTD_diseases.tsv.gz")
filename |
(default "CTD_diseases.tsv.gz") File with the chemicals downloaded from CTDbase. |
The field included in the file (CTD_diseases.tsv.gz
) are:
DiseaseName
DiseaseID (MeSH or OMIM identifier)
Definition
AltDiseaseIDs (alternative identifiers; '|'-delimited list)
ParentIDs (identifiers of the parent terms; '|'-delimited list)
TreeNumbers (identifiers of the disease's nodes; '|'-delimited list)
ParentTreeNumbers (identifiers of the parent nodes; '|'-delimited list)
Synonyms ('|'-delimited list)
SlimMappings (MEDIC-Slim mappings; '|'-delimited list)
A data.frame
with the content of the file "CTD_genes.tsv.gz"
download_ctd_dise() fdl <- load_ctd_dise() dim( fdl )