orderFluo {CONFESS} | R Documentation |
It sort the adjusted (and transfomed) fluorescence signals according to the path progression.
orderFluo(data, path.type, updater = FALSE)
data |
List. A list of adjusted fluorescence signals. |
updater |
Logical. An indicator of the estimation stage. If FALSE the initial groups are analyzed, otherwise the change-point based groups are analyzed. |
path.start |
Integer. A cluster number indicating the starting cluster that algorithm should use to build the path. The cluster numbers refer to the plot generated by Fluo_inspection(). Default is 1. If path.type = "circular" the number does not matter. If path.type = "A2Z" the user should inspect the Fluo_inspection() plot to detect the beginning of the path. If path.type = "other", the function will not estimate a path. The user has to manually insert the path progression (the cluster numbers) in Fluo_modeling() . |
A list with the adjusted fluorescence signals, the centroids, the clusters and the pseudotimes