readOriImg {CONFESS}R Documentation

readOriImg

Description

It reads and processes the original BF image

Usage

readOriImg(imgName, despeckle, pix, thresh, separator, image.type)

Arguments

imgName

Character string. The file name of the image.

despeckle

Logical. If TRUE the BF image is despeckled.

pix

Integer. A cutoff specifing the size of the area to search for speckles.

thresh

Integer. A cutoff to perform the despeckle function. If pixel signal > median object signal + thresh, the object is a speckle and the median object signal is returned.

separator

Character string. Removes the Bright Field ("BF") and channel indicators from the image file names.

image.type

Character string. A triplet of IDs to characterize the type of images under study. They refer to the ImageType part of the original image or txt file names.

Value

A list of BF image estimates


[Package CONFESS version 1.8.0 Index]