aveDiff {CONFESS} | R Documentation |
It estimates the average difference between the original and the CV estimated pseudotimes. For circular path types, the difference is defined as min(diff,max(pseudotime)-diff). For example assuming 300 cells (thus the maximum pseudotime is 300) in a circular path, two pseudotimes 1 and 300 differ only by 1 and not by 299.
aveDiff(data, path.type, maxPseudo)
data |
Numeric. A vector of pseudotimes whose first element is the originally estimated one (fromt he full data). |
path.type |
Character. The input of path.type parameter in pathEstimator(). |
maxPseudo |
Numeric. The maximum possible pseudotime. |
The average difference between the original and the CV estimated pseudotimes for a sample.