visualizeResults {CHRONOS} | R Documentation |
Visualize results in tabular form (txt, xlsx)
visualizeResults(summary, export, expand, colors, from, to)
summary |
Evaluation results as returned from
|
export |
'.xlsx' exports a xlsx file and '.txt' a .txt file. |
expand |
TRUE if each subpathway member and miRNA belongs to a single cell, FALSE if all subpathway members belong to one cell and miRNAs to another cell. |
colors |
The color scheme used in subScores heatmap. |
from |
Primary annotation |
to |
Secondary annotation |
A txt or a xlsx file in CHRONOS/extdata/Output/Scores/Linear/<org>
or CHRONOS/extdata/Output/Scores/Non-Linear/<org>
# Load scored subpathways from toy data load(system.file('extdata', 'Examples//data.RData', package='CHRONOS')) visualizeResults(linSubsScored, export='txt')