get_connectivity {CEMiTool}R Documentation

Calculate network connectivity

Description

This function takes a CEMiTool object and returns the network connectivity.

Usage

get_connectivity(cem, ...)

## S4 method for signature 'CEMiTool'
get_connectivity(cem, beta)

Arguments

cem

Object of class CEMiTool containing the fit_indices slot

...

Optional parameters.

beta

A soft-thresholding value to be used for the network.

Value

The value of the network's connectivity.

Examples

# Get example expression data
data(expr0)
# Initialize new CEMiTool object with expression data
cem <- new_cem(expr0)
# Filter expression data
cem <- filter_expr(cem)
# Get modules and beta data
cem <- find_modules(cem)
# Get network connectivity with example beta value 8
get_connectivity(cem, beta=8)


[Package CEMiTool version 1.4.2 Index]