plotMahal {CATALYST} | R Documentation |
Histogram of counts and plot of yields as a function of separation cutoffs.
plotMahal(x, ...) ## S4 method for signature 'dbFrame' plotMahal(x, which, cofactor = 50, out_path = NULL, name_ext = NULL)
x |
a |
... |
optional arguments. |
which |
character string. Specifies which barcode to plot. |
cofactor |
numeric. Cofactor used for asinh transformation. |
out_path |
character string. If specified, outputs will be generated here. |
name_ext |
character string. If specified, will be appended to file name. |
Plots all inter-barcode interactions for the population specified
by argument which
. Events are colored by their Mahalanobis distance.
Helena Lucia Crowell crowellh@student.ethz.ch
Zunder, E.R. et al. (2015). Palladium-based mass tag cell barcoding with a doublet-filtering scheme and single-cell deconvolution algorithm. Nature Protocols 10, 316-333.
data(sample_ff, sample_key) re <- assignPrelim(x = sample_ff, y = sample_key) re <- estCutoffs(x = re) re <- applyCutoffs(x = re) plotMahal(x = re, which = "B3")