genomeName {CAGEr} | R Documentation |
Extracts the name of a referent genome from a
CAGEset
and CAGEexp
objects.
genomeName(object) ## S4 method for signature 'CAGEset' genomeName(object) ## S4 method for signature 'CAGEexp' genomeName(object) ## S4 method for signature 'CTSS' genomeName(object) genomeName(object) <- value ## S4 replacement method for signature 'CAGEset' genomeName(object) <- value ## S4 replacement method for signature 'CAGEexp' genomeName(object) <- value ## S4 replacement method for signature 'CTSS' genomeName(object) <- value
object |
A CAGEset or CAGEexp object. |
value |
The name of a |
CAGEexp
objects constructed with NULL
in place
of the genome name can not run some commands that need access to genomic data,
such as BigWig export or G-correction.
Returns a name of a BSgenome package used as a referent genome.
Vanja Haberle
Charles Plessy
Other CAGEr accessor methods: CTSSclusteringMethod
,
CTSScoordinates
,
CTSScumulativesTagClusters
,
CTSSnormalizedTpm
,
CTSStagCountTable
,
CTSStagCount
, GeneExpDESeq2
,
GeneExpSE
, inputFilesType
,
inputFiles
, librarySizes
,
sampleLabels
,
seqNameTotalsSE
, tagClusters
Other CAGEr setter methods: inputFilesType
,
inputFiles
, sampleLabels
,
setColors
genomeName(exampleCAGEset)