tagClustersQuantile {CAGEr} | R Documentation |
Accessor functions to quantile metadata.
tagClustersQuantile(object, samples = NULL, q = NULL) ## S4 method for signature 'TagClusters' tagClustersQuantile(object, samples = NULL, q = NULL) ## S4 method for signature 'CAGEexp' tagClustersQuantile(object, samples = NULL, q = NULL) tagClustersQuantileLow(object, samples = NULL, q = NULL) ## S4 method for signature 'CAGEset' tagClustersQuantileLow(object, samples = NULL, q = NULL) ## S4 method for signature 'CAGEexp' tagClustersQuantileLow(object, samples = NULL, q = NULL) tagClustersQuantileUp(object, samples = NULL, q = NULL) ## S4 method for signature 'CAGEset' tagClustersQuantileUp(object, samples = NULL, q = NULL) ## S4 method for signature 'CAGEexp' tagClustersQuantileUp(object, samples = NULL, q = NULL) tagClustersQuantileLow(object, samples = NULL) <- value ## S4 replacement method for signature 'CAGEset' tagClustersQuantileLow(object, samples = NULL) <- value ## S4 replacement method for signature 'CAGEexp' tagClustersQuantileLow(object, samples = NULL) <- value tagClustersQuantileUp(object, samples = NULL) <- value ## S4 replacement method for signature 'CAGEset' tagClustersQuantileUp(object, samples = NULL) <- value ## S4 replacement method for signature 'CAGEexp' tagClustersQuantileLow(object, samples = NULL) <- value
object |
A |
samples |
Sample name(s), number(s) or |
q |
A single quantile (not a list) |
value |
A list (one entry per sample) of data frames with multiple columns:
|
Returns a data.frame
where the first column gives cluster
names and the next columns give quantile positions, in zero-based
chromosome coordinates (because the tag clusters in CAGEset objects are
represented in zero-based coordinates as well)).