seqNameTotalsSE {CAGEr} | R Documentation |
Get or set a SummarizedExperiment
summarising whole-chromosome
expression levels in the experiment slot seqNameTotals
and the sample metadata
of the CAGEexp
object.
seqNameTotalsSE(object) ## S4 method for signature 'CAGEset' seqNameTotalsSE(object) ## S4 method for signature 'CAGEexp' seqNameTotalsSE(object) seqNameTotalsSE(object) <- value
object |
A |
value |
A SummarizedExperiment object where rows represent reference sequences such as chromosomes. |
Charles Plessy
summariseChrExpr
Other CAGEr accessor methods: CTSSclusteringMethod
,
CTSScoordinates
,
CTSScumulativesTagClusters
,
CTSSnormalizedTpm
,
CTSStagCountTable
,
CTSStagCount
, GeneExpDESeq2
,
GeneExpSE
, genomeName
,
inputFilesType
, inputFiles
,
librarySizes
, sampleLabels
,
tagClusters
seqNameTotalsSE(exampleCAGEexp)