CAGEr-class {CAGEr}R Documentation

CAGEr objects

Description

The CAGEr package provides two classes of objects to load, contain and process CAGE data:

Details

Most CAGEr functions support both classes interchangabely, and the CAGEr class was created for methods that support both classes identically.

References

Haberle V, Forrest ARR, Hayashizaki Y, Carninci P and Lenhard B (2015). “CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses.” Nucleic Acids Research, 43, pp. e51., http://nar.oxfordjournals.org/content/43/8/e51


[Package CAGEr version 1.22.3 Index]