CTSSclusteringMethod {CAGEr} | R Documentation |
Returns or sets the name of the method that was used make tag
clusters from the CTSSs of a CAGEr
object.
CTSSclusteringMethod(object) ## S4 method for signature 'CAGEset' CTSSclusteringMethod(object) ## S4 method for signature 'GRangesList' CTSSclusteringMethod(object) ## S4 method for signature 'CAGEexp' CTSSclusteringMethod(object) CTSSclusteringMethod(object) <- value ## S4 replacement method for signature 'CAGEset' CTSSclusteringMethod(object) <- value ## S4 replacement method for signature 'GRangesList' CTSSclusteringMethod(object) <- value ## S4 replacement method for signature 'CAGEexp' CTSSclusteringMethod(object) <- value
object |
A CAGEr object. |
value |
character |
Vanja Haberle
Charles Plessy
Other CAGEr accessor methods: CTSScoordinates
,
CTSScumulativesTagClusters
,
CTSSnormalizedTpm
,
CTSStagCountTable
,
CTSStagCount
, GeneExpDESeq2
,
GeneExpSE
, genomeName
,
inputFilesType
, inputFiles
,
librarySizes
, sampleLabels
,
seqNameTotalsSE
, tagClusters
Other CAGEr clusters functions: CTSScumulativesTagClusters
,
CustomConsensusClusters
,
aggregateTagClusters
,
clusterCTSS
,
consensusClustersDESeq2
,
consensusClustersGR
,
cumulativeCTSSdistribution
,
plotInterquantileWidth
,
quantilePositions
,
tagClusters
CTSSclusteringMethod(exampleCAGEset) CTSSclusteringMethod(exampleCAGEexp)