bam2CTSS {CAGEr}R Documentation

bam2CTSS

Description

Converts from BAM to CTSS

Usage

bam2CTSS(gr, removeFirstG, correctSystematicG, genome)

Arguments

gr

A GRanges object returned by import.bam.

removeFirstG

See getCTSS().

correctSystematicG

See getCTSS().

genome

See coerceInBSgenome().

Details

Converts genomic ranges representing SAM/BAM alignments into a CTSS object.

Value

Returns a CTSS object.

See Also

Other loadFileIntoGPos: import.CTSS, import.bam.ctss, import.bam, import.bedCTSS, import.bedScore, import.bedmolecule, loadFileIntoGPos, moleculesGR2CTSS


[Package CAGEr version 1.22.3 Index]