calcTotalTags {CAGEfightR} | R Documentation |
For each CAGE library, calculate the total number of tags.
calcTotalTags(object, inputAssay = "counts", outputColumn = "totalTags")
object |
RangedSummarizedExperiment: CAGE data quantified at CTSS, cluster or gene-level. |
inputAssay |
character: Name of assay holding input expression values. |
outputColumn |
character: Name of column in colData to hold number of total tags. |
object with total tags per library added as a column in colData.
Other Calculation functions: calcBidirectionality
,
calcComposition
, calcPooled
,
calcShape
, calcSupport
,
calcTPM
,
subsetByBidirectionality
,
subsetByComposition
,
subsetBySupport
data(exampleUnidirectional) calcTotalTags(exampleUnidirectional)