calcTotalTags {CAGEfightR}R Documentation

Calculate the total number of CAGE tags across samples.

Description

For each CAGE library, calculate the total number of tags.

Usage

calcTotalTags(object, inputAssay = "counts", outputColumn = "totalTags")

Arguments

object

RangedSummarizedExperiment: CAGE data quantified at CTSS, cluster or gene-level.

inputAssay

character: Name of assay holding input expression values.

outputColumn

character: Name of column in colData to hold number of total tags.

Value

object with total tags per library added as a column in colData.

See Also

Other Calculation functions: calcBidirectionality, calcComposition, calcPooled, calcShape, calcSupport, calcTPM, subsetByBidirectionality, subsetByComposition, subsetBySupport

Examples

data(exampleUnidirectional)
calcTotalTags(exampleUnidirectional)

[Package CAGEfightR version 1.0.0 Index]