plot-BASiCS_Chain-method {BASiCS}R Documentation

'plot' method for BASiCS_Chain objects

Description

'plot' method for BASiCS_Chain objects

Usage

## S4 method for signature 'BASiCS_Chain,ANY'
plot(x, Param = "mu", Gene = NULL,
  Cell = NULL, Batch = 1, RegressionTerm = NULL, ylab = "", xlab = "",
  ...)

Arguments

x

A BASiCS_Chain object.

Param

Name of the slot to be used for the plot. Possible values: 'mu', 'delta', 'phi', 's', 'nu', 'theta', 'beta', 'sigma2' and 'epsilon'.

Gene

Specifies which gene is requested. Required only if Param = 'mu' or 'delta'

Cell

Specifies which cell is requested. Required only if Param = 'phi', 's' or 'nu'

Batch

Specifies which batch is requested. Required only if Param = 'theta'

RegressionTerm

Specifies which regression coefficient is requested. Required only if Param = 'beta'

ylab

As in par.

xlab

As in par.

...

Other graphical parameters (see par).

Value

A plot object

Author(s)

Catalina A. Vallejos cnvallej@uc.cl

Nils Eling eling@ebi.ac.uk

Examples


# See
help(BASiCS_MCMC)


[Package BASiCS version 1.2.1 Index]