quantilePlots {ARRmNormalization} | R Documentation |
For each probe type, and for each sample, several percentiles are plotted against background intensity, and also against dye bias.
quantilePlots(quantiles,backgroundInfo,designInfo,percentilesI=NULL,percentilesII=NULL)
quantiles |
A |
designInfo |
|
backgroundInfo |
|
percentilesI |
List of percentiles to be plotted for Type I probes. Must be a vector of integers from 1 to 100. If set to |
percentilesII |
List of percentiles to be plotted for Type II probes. Must be a vector of integers from 1 to 100. If set to |
Plots are produced and saved as pdf in the current directory.
Jean-Philippe Fortin <jfortin@jhsph.edu>
data(greenControlMatrix) data(redControlMatrix) data(sampleNames) data(betaMatrix) quantiles=getQuantiles(betaMatrix) backgroundInfo=getBackground(greenControlMatrix, redControlMatrix) designInfo=getDesignInfo(sampleNames) quantilePlots(quantiles, backgroundInfo, designInfo)