$-method | LinearEmbeddingMatrix getters/setters |
$<--method | LinearEmbeddingMatrix getters/setters |
as.matrix-method | LinearEmbeddingMatrix getters/setters |
cbind-method | LEM combining methods |
cbind-method | SCE combining methods |
clearSizeFactors | Size factors methods |
clearSizeFactors-method | Size factors methods |
clearSpikes | Spike-in methods |
clearSpikes-method | Spike-in methods |
coerce-method | SingleCellExperiment class |
colData-method | Miscellaneous SCE methods |
counts | Named assay fields |
counts-method | Named assay fields |
counts<- | Named assay fields |
counts<--method | Named assay fields |
cpm | Named assay fields |
cpm-method | Named assay fields |
cpm<- | Named assay fields |
cpm<--method | Named assay fields |
dim-method | LinearEmbeddingMatrix getters/setters |
dimnames-method | LinearEmbeddingMatrix getters/setters |
dimnames<--method | LinearEmbeddingMatrix getters/setters |
factorData | LinearEmbeddingMatrix getters/setters |
factorData-method | LinearEmbeddingMatrix getters/setters |
factorData<- | LinearEmbeddingMatrix getters/setters |
factorData<--method | LinearEmbeddingMatrix getters/setters |
featureLoadings | LinearEmbeddingMatrix getters/setters |
featureLoadings-method | LinearEmbeddingMatrix getters/setters |
featureLoadings<- | LinearEmbeddingMatrix getters/setters |
featureLoadings<--method | LinearEmbeddingMatrix getters/setters |
isSpike | Spike-in methods |
isSpike-method | Spike-in methods |
isSpike<- | Spike-in methods |
isSpike<--method | Spike-in methods |
LinearEmbeddingMatrix | LinearEmbeddingMatrix class |
LinearEmbeddingMatrix-class | LinearEmbeddingMatrix class |
logcounts | Named assay fields |
logcounts-method | Named assay fields |
logcounts<- | Named assay fields |
logcounts<--method | Named assay fields |
normcounts | Named assay fields |
normcounts-method | Named assay fields |
normcounts<- | Named assay fields |
normcounts<--method | Named assay fields |
objectVersion | Miscellaneous SCE methods |
objectVersion-method | Miscellaneous SCE methods |
rbind-method | LEM combining methods |
rbind-method | SCE combining methods |
reducedDim | Reduced dimensions methods |
reducedDim-method | Reduced dimensions methods |
reducedDim<- | Reduced dimensions methods |
reducedDim<--method | Reduced dimensions methods |
reducedDimNames | Reduced dimensions methods |
reducedDimNames-method | Reduced dimensions methods |
reducedDims | Reduced dimensions methods |
reducedDims-method | Reduced dimensions methods |
reducedDims<- | Reduced dimensions methods |
reducedDims<--method | Reduced dimensions methods |
rowData-method | Miscellaneous SCE methods |
sampleFactors | LinearEmbeddingMatrix getters/setters |
sampleFactors-method | LinearEmbeddingMatrix getters/setters |
sampleFactors<- | LinearEmbeddingMatrix getters/setters |
sampleFactors<--method | LinearEmbeddingMatrix getters/setters |
show-method | Miscellaneous LEM methods |
show-method | Miscellaneous SCE methods |
SingleCellExperiment | SingleCellExperiment class |
SingleCellExperiment-class | SingleCellExperiment class |
sizeFactorNames | Size factors methods |
sizeFactorNames-method | Size factors methods |
sizeFactors | Size factors methods |
sizeFactors-method | Size factors methods |
sizeFactors<--method | Size factors methods |
spikeNames | Spike-in methods |
spikeNames-method | Spike-in methods |
subset-method | SCE subsetting methods |
tpm | Named assay fields |
tpm-method | Named assay fields |
tpm<- | Named assay fields |
tpm<--method | Named assay fields |
[-method | LEM subsetting methods |
[-method | SCE subsetting methods |
[<--method | LEM subsetting methods |
[<--method | SCE subsetting methods |