ivygapSE

DOI: 10.18129/B9.bioc.ivygapSE    

A SummarizedExperiment for Ivy-GAP data

Bioconductor version: Release (3.6)

Define a SummarizedExperiment and exploratory app for Ivy-GAP glioblastoma image, expression, and clinical data.

Author: Vince Carey

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ivygapSE")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ivygapSE")

 

PDF	R Script	ivygapSE -- SummarizedExperiment for Ivy-GAP
PDF		Reference Manual

Details

biocViews	Software, Survival, Transcription, Visualization
Version	1.0.0
License	Artistic-2.0
Depends	R (>= 3.4.0), SummarizedExperiment
Imports	shiny, survival, survminer, hwriter, plotly, ggplot2, S4Vectors, graphics, stats, utils, UpSetR
LinkingTo
Suggests	knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ivygapSE_1.0.0.tar.gz
Windows Binary	ivygapSE_1.0.0.zip
Mac OS X 10.11 (El Capitan)	ivygapSE_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ivygapSE
Package Short Url	http://bioconductor.org/packages/ivygapSE/
Package Downloads Report	Download Stats