isomiRs

DOI: 10.18129/B9.bioc.isomiRs    

Analyze isomiRs and miRNAs from small RNA-seq

Bioconductor version: Release (3.6)

Characterization of miRNAs and isomiRs, clustering and differential expression.

Author: Lorena Pantano [aut, cre], Georgia Escaramis [aut], Christos Argyropoulos [aut]

Maintainer: Lorena Pantano <lorena.pantano at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("isomiRs")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("isomiRs")

 

PDF	R Script	isomiRs
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Clustering, DifferentialExpression, RNASeq, Software, miRNA
Version	1.6.0
In Bioconductor since	BioC 3.3 (R-3.3) (2 years)
License	MIT + file LICENSE
Depends	R (>= 3.4), DiscriMiner, SummarizedExperiment, TMB (>= 1.7.6), RcppEigen
Imports	BiocGenerics(>= 0.7.5), IRanges, S4Vectors, GenomicRanges, Biobase, DESeq2, reshape, tidyr, readr, dplyr, RColorBrewer, gplots, methods, ggplot2, gtools, gridExtra, grid, grDevices, graphics, stats, GGally, gamlss, lme4, gamlss.dist
LinkingTo	TMB, RcppEigen
Suggests	knitr, RUnit, org.Mm.eg.db, cluster, clusterProfiler, pheatmap, BiocStyle, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	isomiRs_1.6.0.tar.gz
Windows Binary	isomiRs_1.6.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	isomiRs_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/isomiRs
Package Short Url	http://bioconductor.org/packages/isomiRs/
Package Downloads Report	Download Stats