beachmat

DOI: 10.18129/B9.bioc.beachmat    

Compiling Bioconductor to Handle Each Matrix Type

Bioconductor version: Release (3.6)

Provides a consistent C++ class interface for a variety of commonly used matrix types, including sparse and HDF5-backed matrices.

Author: Aaron Lun [aut, cre], Herve Pages [aut], Mike Smith [aut]

Maintainer: Aaron Lun <alun at wehi.edu.au>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("beachmat")

Documentation

HTML	R Script	A C++ API for R matrix objects
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, DataRepresentation, Infrastructure, Software
Version	1.0.2
License	GPL-3
Depends	R (>= 3.4)
Imports	utils, Rhdf5lib, HDF5Array, DelayedArray, Rcpp (>= 0.12.14), rhdf5, methods
LinkingTo	Rcpp, Rhdf5lib
Suggests	testthat, BiocStyle, knitr, Matrix
SystemRequirements	C++11
Enhances
URL
Depends On Me
Imports Me
Suggests Me	scater, scran
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	beachmat_1.0.2.tar.gz
Windows Binary	beachmat_1.0.2.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	beachmat_1.0.2.tgz
Source Repository	git clone https://git.bioconductor.org/packages/beachmat
Package Short Url	http://bioconductor.org/packages/beachmat/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive