ImmuneSpaceR

DOI: 10.18129/B9.bioc.ImmuneSpaceR    

A Thin Wrapper around the ImmuneSpace Database

Bioconductor version: Release (3.6)

Provides a convenient API for accessing data sets within ImmuneSpace (www.immunespace.org), the data repository and analysis platform of the Human Immunology Project Consortium (HIPC).

Author: Greg Finak [aut], Renan Sauteraud [aut], Mike Jiang [aut], Gil Guday [aut], Leo Dashevskiy [aut], Evan Henrich [aut], Ju Yeong Kim [aut], Raphael Gottardo [aut], ImmuneSpace Package Maintainer [cre, cph]

Maintainer: ImmuneSpace Package Maintainer <immunespace at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ImmuneSpaceR")

Documentation

HTML	R Script	An introduction to the ImmuneSpaceR package
HTML	R Script	Downloading tables with getDataset
HTML	R Script	Handling expression matrices with ImmuneSpaceR
HTML	R Script	Reproducing an online report using ImmuneSpaceR: Correlation between HAI and flow cytometry in SDY269
HTML	R Script	Reproducing an online report using ImmuneSpaceR: Correlation of HAI/virus neutralizition titer and cell counts in SDY144
HTML	R Script	Reproducing an online report using ImmuneSpaceR: Plasmablast abundance in SDY180
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, DataRepresentation, Software, ThirdPartyClient
Version	1.6.2
In Bioconductor since	BioC 3.3 (R-3.3) (2 years)
License	GPL-2
Depends
Imports	utils, methods, data.table, httr, Rlabkey (>= 2.1.136), Biobase, pheatmap, ggplot2, scales, stats, gtools, gplots, reshape2, plotly, heatmaply (>= 0.7.0), rjson, rmarkdown, preprocessCore, parallel
LinkingTo
Suggests	knitr, testthat
SystemRequirements
Enhances
URL	https://github.com/RGLab/ImmuneSpaceR
BugReports	https://github.com/RGLab/ImmuneSpaceR/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ImmuneSpaceR_1.6.2.tar.gz
Windows Binary	ImmuneSpaceR_1.6.2.zip
Mac OS X 10.11 (El Capitan)	ImmuneSpaceR_1.6.2.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ImmuneSpaceR
Package Short Url	http://bioconductor.org/packages/ImmuneSpaceR/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive