GSEABase

DOI: 10.18129/B9.bioc.GSEABase    

Gene set enrichment data structures and methods

Bioconductor version: Release (3.6)

This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).

Author: Martin Morgan, Seth Falcon, Robert Gentleman

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GSEABase")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSEABase")

 

PDF	R Script	An introduction to GSEABase
PDF		Reference Manual
Text		NEWS

Details

biocViews	GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, KEGG, Software
Version	1.40.1
In Bioconductor since	BioC 2.1 (R-2.6) (10.5 years)
License	Artistic-2.0
Depends	R (>= 2.6.0), BiocGenerics(>= 0.13.8), Biobase(>= 2.17.8), annotate(>= 1.45.3), methods, graph(>= 1.37.2)
Imports	AnnotationDbi, XML
LinkingTo
Suggests	hgu95av2.db, GO.db, org.Hs.eg.db, Rgraphviz, ReportingTools, testthat
SystemRequirements
Enhances
URL
Depends On Me	AGDEX, BicARE, CCPROMISE, cpvSNP, gCMAP, GRridge, GSVAdata, npGSEA, PROMISE, splineTimeR
Imports Me	AUCell, canceR, Category, categoryCompare, cellHTS2, EnrichmentBrowser, gCMAPWeb, GISPA, GSRI, GSVA, HTSanalyzeR, MIGSA, mogsa, oppar, PCpheno, phenoTest, POST, PROMISE, ReportingTools, slalom
Suggests Me	BiocCaseStudies, BioCor, clusterProfiler, gage, GlobalAncova, globaltest, GOstats, GSAR, GSEAlm, MAST, PGSEA, phenoTest
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GSEABase_1.40.1.tar.gz
Windows Binary	GSEABase_1.40.1.zip
Mac OS X 10.11 (El Capitan)	GSEABase_1.40.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GSEABase
Package Short Url	http://bioconductor.org/packages/GSEABase/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive