pcxn_heatmap {pcxn} | R Documentation |
Draw a heatmap of a pcxn object where color represents correlation coefficients.
pcxn_heatmap(object, cluster_method = "complete")
object |
pcxn object created by pcxn_explore or pcxn_analyze functions |
cluster_method |
clustering method drawn from: "ward.D", "ward.D2", "single", "complete", "average", "mcquitty", "median", "centroid" |
a pheatmap object
Sokratis Kariotis
# Draw a heatmap of a pcxn object with a specific clustering method object <- pcxn_explore("pathprint","Alzheimer's disease (KEGG)", 10, 0.05, 0.05) pcxn_heatmap(object, "complete")