ndexr-package {ndexr} | R Documentation |
The ndexr package offers an interface to NDEx servers, e.g. the public server at http://ndexbio.org/. It can retrieve and save networks via the API. Networks are offered as RCX object and as igraph representation.
Package: | ndexr |
Type: | Package |
Version: | 2.0.7 |
Date: | 2016-12-02 |
License: | TBD |
Frank Kramer frank.kramer@med.uni-goettingen.de
Florian Auer florian.auer@med.uni-goettingen.de
Alex Ishkin aleksandr.ishkin@thomsonreuters.com
Dexter Pratt depratt@ucsc.edu
## Not run: require(ndexr) ###connect anonymously ndexcon1 = ndex_connect(verbose=T) ###get network api apidata1 = ndex_get_network.api(ndexcon1) ###find some networks containing p53 pws1 = ndexr::ndex_find_networks(ndexcon1,"p53") ###get complete network as RCX rcx1 = ndex.get.complete.network(ndexcon1,pws1[1,"externalId"]) ###convert to ngraph and back ngraph1 = ndex.RCX2ngraph(rcx1) plot(ngraph1, vertex.label=V(ngraph1)$n, edge.label=E(ngraph1)$i) ## End(Not run)