SpidermiRanalyze_mirna_network {SpidermiR} | R Documentation |
SpidermiRanalyze_mirna_network creates a data frame with miRNA gene interaction. The user can filter the search by disease.
SpidermiRanalyze_mirna_network(data, miR_trg, mirna_t = NULL, disease = NULL)
data |
SpidermiRprepare_NET output |
miR_trg |
a parameter to indicate miRNA target database used. The user can use: 1) validated database (val) or 2) predicted database (pred) |
mirna_t |
a list given by the user with miRNA list of interest |
disease |
miRNA gene interaction can be filtered by disease using the parameters obatined from SpidermiRquery_disease |
dataframe with miRNA gene interaction data
GS_net <- data.frame(gA=c('SMAD','MYC'),gB=c('FOXM1','KRAS'),stringsAsFactors=FALSE) miRNA_NET<-SpidermiRanalyze_mirna_network(data=GS_net,disease="prostate cancer",miR_trg="val")