FABIA: Factor Analysis for Bicluster Acquisition


[Up] [Top]

Documentation for package ‘fabia’ version 2.24.0

Help Pages

A C E F I L M N P R S U X Z

-- A --

avini Factorization instances
avini-method Factorization instances
avini<- Factorization instances
avini<--method Factorization instances

-- C --

center Factorization instances
center-method Factorization instances
center<- Factorization instances
center<--method Factorization instances

-- E --

estimateMode Estimation of the modes of the rows of a matrix
extractBic Extraction of Biclusters
extractPlot Plotting of Biclustering Results

-- F --

fabi Factor Analysis for Bicluster Acquisition: Laplace Prior (FABI)
fabia Factor Analysis for Bicluster Acquisition: Laplace Prior (FABIA)
fabiaDemo Demos for fabia
fabiap Factor Analysis for Bicluster Acquisition: Post-Projection (FABIAP)
fabias Factor Analysis for Bicluster Acquisition: Sparseness Projection (FABIAS)
fabiasp Factor Analysis for Bicluster Acquisition: Sparseness Projection (FABIASP)
fabiaVersion Display version info for package and for FABIA
Factorization Factorization instances
Factorization-class Factorization instances
Factorization-method Factorization instances

-- I --

ini Factorization instances
ini-method Factorization instances
ini<- Factorization instances
ini<--method Factorization instances

-- L --

L Factorization instances
l Factorization instances
L-method Factorization instances
l-method Factorization instances
L<- Factorization instances
l<- Factorization instances
L<--method Factorization instances
l<--method Factorization instances
lapla Factorization instances
lapla-method Factorization instances
lapla<- Factorization instances
lapla<--method Factorization instances
LZ Factorization instances
LZ-method Factorization instances
LZ<- Factorization instances
LZ<--method Factorization instances

-- M --

M Factorization instances
M-method Factorization instances
M<- Factorization instances
M<--method Factorization instances
makeFabiaData Generation of Bicluster Data
makeFabiaDataBlocks Generation of Bicluster Data with Bicluster Blocks
makeFabiaDataBlocksPos Generation of Bicluster Data with Bicluster Blocks
makeFabiaDataPos Generation of Bicluster Data
matrixImagePlot Plotting of a Matrix
mfsc Sparse Matrix Factorization for Bicluster Analysis (MFSC)

-- N --

n Factorization instances
n-method Factorization instances
n<- Factorization instances
n<--method Factorization instances
nmfdiv Non-negative Matrix Factorization: Kullback-Leibler Divergence
nmfeu Non-negative Matrix Factorization: Euclidean Distance
nmfsc Non-negative Sparse Matrix Factorization

-- P --

p1 Factorization instances
p1-method Factorization instances
p1<- Factorization instances
p1<--method Factorization instances
p2 Factorization instances
p2-method Factorization instances
p2<- Factorization instances
p2<--method Factorization instances
parameters Factorization instances
parameters-method Factorization instances
parameters<- Factorization instances
parameters<--method Factorization instances
plot-method Factorization instances
plotBicluster Plotting of a bicluster
projFunc Projection of a Vector to a Sparse Vector
projFuncPos Projection of a Vector to a Non-negative Sparse Vector
Psi Factorization instances
Psi-method Factorization instances
Psi<- Factorization instances
Psi<--method Factorization instances

-- R --

readSamplesSpfabia Factor Analysis for Bicluster Acquisition: Read Sparse Matrix Samples
readSpfabiaResult Factor Analysis for Bicluster Acquisition: Read Results of SpFabia

-- S --

samplesPerFeature Factor Analysis for Bicluster Acquisition: Supplies samples per feature
scaleData Factorization instances
scaleData-method Factorization instances
scaleData<- Factorization instances
scaleData<--method Factorization instances
show-method Factorization instances
showSelected Factorization instances
showSelected-method Factorization instances
spfabia Factor Analysis for Bicluster Acquisition: SPARSE FABIA
summary-method Factorization instances

-- U --

U Factorization instances
U-method Factorization instances
U<- Factorization instances
U<--method Factorization instances

-- X --

X Factorization instances
X-method Factorization instances
X<- Factorization instances
X<--method Factorization instances
xavini Factorization instances
xavini-method Factorization instances
xavini<- Factorization instances
xavini<--method Factorization instances

-- Z --

Z Factorization instances
Z-method Factorization instances
Z<- Factorization instances
Z<--method Factorization instances