RVS-package |
RVS |
ComputeKinshipPropCeof |
ratio of excess kinship among descendants over mean kinship among founders |
ComputeKinshipPropCoef |
ratio of excess kinship among descendants over mean kinship among founders |
ComputeKinshipPropCoef-method |
ratio of excess kinship among descendants over mean kinship among founders |
ex.ped.mat |
matrix of pedigree information and genotype data from famVCF stored in the LINKAGE format |
fam15157.vcf |
VCF objects containing genotype data for two families: fam15157 and fam28003 (corresponding to the secondCousinTriple and firstAndSecondCousinsTriple families in samplePedigrees) |
fam28003.vcf |
VCF objects containing genotype data for two families: fam15157 and fam28003 (corresponding to the secondCousinTriple and firstAndSecondCousinsTriple families in samplePedigrees) |
GeneDrop |
deprecated function |
GeneDropSim.allsubsets.fn |
deprecated function |
GeneDropSim.fn |
deprecated function |
GeneDropSimExcessSharing.fn |
deprecated function |
get.psubset |
deprecated function |
multipleFamilyPValue |
probability of sharing of rare variants in a subset of families |
ped2trio |
deprecated function |
processPedigree |
extract useful information from a pedigree |
processPedigree-method |
extract useful information from a pedigree |
RVgene |
Probability of sharing of rare variants in a family sample within a gene |
RVS |
RVS |
RVsharing |
probability of sharing a rare variant among relatives |
RVsharing-method |
probability of sharing a rare variant among relatives |
samplePedigrees |
list of 8 sample pedigree objects |
snpMat |
SnpMatrix with genotype information from famVCF for fam15157 |
SnpMatrixToCount |
convert a list of SnpMatrices to a single matrix in a similiar format as LINKAGE except with minor allele counts |